utilities.cpp

来自「ncbi源码」· C++ 代码 · 共 1,229 行 · 第 1/4 页

    Associate( CSeqFeatData::eSubtype_attenuator, CGbqualType::e_Usedin );

    // C_region
    Associate( CSeqFeatData::eSubtype_C_region, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_C_region, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_C_region, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_C_region, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_C_region, CGbqualType::e_Usedin );

    // CAAT_signal
    Associate( CSeqFeatData::eSubtype_CAAT_signal, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_CAAT_signal, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_CAAT_signal, CGbqualType::e_Usedin );

    // Imp_CDS
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Codon );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_EC_number );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Number );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_Imp_CDS, CGbqualType::e_Usedin );

    // conflict
    Associate( CSeqFeatData::eSubtype_conflict, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_conflict, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_conflict, CGbqualType::e_Replace );
    Associate( CSeqFeatData::eSubtype_conflict, CGbqualType::e_Label );

    // D_loop
    Associate( CSeqFeatData::eSubtype_D_loop, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_D_loop, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_D_loop, CGbqualType::e_Usedin );

    // D_segment
    Associate( CSeqFeatData::eSubtype_D_segment, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_D_segment, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_D_segment, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_D_segment, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_D_segment, CGbqualType::e_Usedin );

    // enhancer
    Associate( CSeqFeatData::eSubtype_enhancer, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_enhancer, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_enhancer, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_enhancer, CGbqualType::e_Usedin );

    // exon
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Allele );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_EC_number );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Number );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_exon, CGbqualType::e_Usedin );

    // GC_signal
    Associate( CSeqFeatData::eSubtype_GC_signal, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_GC_signal, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_GC_signal, CGbqualType::e_Usedin );

    // iDNA
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Number );
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_iDNA, CGbqualType::e_Usedin );

    // intron
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Allele );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Cons_splice );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Number );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_intron, CGbqualType::e_Usedin );

    // J_segment
    Associate( CSeqFeatData::eSubtype_J_segment, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_J_segment, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_J_segment, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_J_segment, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_J_segment, CGbqualType::e_Usedin );

    // LTR
    Associate( CSeqFeatData::eSubtype_LTR, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_LTR, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_LTR, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_LTR, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_LTR, CGbqualType::e_Usedin );

    // mat_peptide
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_EC_number );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_mat_peptide, CGbqualType::e_Usedin );

    // misc_binding
    Associate( CSeqFeatData::eSubtype_misc_binding, CGbqualType::e_Bound_moiety );
    Associate( CSeqFeatData::eSubtype_misc_binding, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_misc_binding, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_binding, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_binding, CGbqualType::e_Usedin );

    // misc_difference
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Clone );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Phenotype );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Replace );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_misc_difference, CGbqualType::e_Usedin );

    // misc_feature
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Number );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Phenotype );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_misc_feature, CGbqualType::e_Usedin );

    // misc_recomb
    Associate( CSeqFeatData::eSubtype_misc_recomb, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_recomb, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_recomb, CGbqualType::e_Organism );
    Associate( CSeqFeatData::eSubtype_misc_recomb, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_misc_recomb, CGbqualType::e_Usedin );

    // misc_signal
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Phenotype );
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_misc_signal, CGbqualType::e_Usedin );

    // misc_structure
    Associate( CSeqFeatData::eSubtype_misc_structure, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_misc_structure, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_misc_structure, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_misc_structure, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_misc_structure, CGbqualType::e_Usedin );

    // modified_base
    Associate( CSeqFeatData::eSubtype_modified_base, CGbqualType::e_Frequency );
    Associate( CSeqFeatData::eSubtype_modified_base, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_modified_base, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_modified_base, CGbqualType::e_Mod_base );
    Associate( CSeqFeatData::eSubtype_modified_base, CGbqualType::e_Usedin );

    // N_region
    Associate( CSeqFeatData::eSubtype_N_region, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_N_region, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_N_region, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_N_region, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_N_region, CGbqualType::e_Usedin );

    // old_sequence
    Associate( CSeqFeatData::eSubtype_old_sequence, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_old_sequence, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_old_sequence, CGbqualType::e_Replace );
    Associate( CSeqFeatData::eSubtype_old_sequence, CGbqualType::e_Usedin );

    // polyA_signal
    Associate( CSeqFeatData::eSubtype_polyA_signal, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_polyA_signal, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_polyA_signal, CGbqualType::e_Usedin );

    // polyA_site
    Associate( CSeqFeatData::eSubtype_polyA_site, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_polyA_site, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_polyA_site, CGbqualType::e_Usedin );

    // prim_transcript
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Allele );
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_prim_transcript, CGbqualType::e_Usedin );

    // primer_bind
    Associate( CSeqFeatData::eSubtype_primer_bind, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_primer_bind, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_primer_bind, CGbqualType::e_PCR_conditions );
    Associate( CSeqFeatData::eSubtype_primer_bind, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_primer_bind, CGbqualType::e_Usedin );

    // promoter
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Phenotype );
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_promoter, CGbqualType::e_Usedin );

    // protein_bind
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Bound_moiety );
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_protein_bind, CGbqualType::e_Usedin );

    // RBS
    Associate( CSeqFeatData::eSubtype_RBS, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_RBS, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_RBS, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_RBS, CGbqualType::e_Usedin );

    // repeat_region
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Rpt_family );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Rpt_type );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Rpt_unit );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Transposon );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Usedin );
    Associate( CSeqFeatData::eSubtype_repeat_region, CGbqualType::e_Insertion_seq );

    // repeat_unit
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Rpt_family );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Rpt_type );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Usedin );

    // rep_origin
    Associate( CSeqFeatData::eSubtype_rep_origin, CGbqualType::e_Direction );
    Associate( CSeqFeatData::eSubtype_rep_origin, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_rep_origin, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_rep_origin, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_rep_origin, CGbqualType::e_Usedin );

    // S_region
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_repeat_unit, CGbqualType::e_Usedin );

    // satellite
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Rpt_family );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Rpt_type );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Rpt_unit );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_satellite, CGbqualType::e_Usedin );

    // sig_peptide
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_sig_peptide, CGbqualType::e_Usedin );

    // stem_loop
    Associate( CSeqFeatData::eSubtype_stem_loop, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_stem_loop, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_stem_loop, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_stem_loop, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_stem_loop, CGbqualType::e_Usedin );

    // STS
    Associate( CSeqFeatData::eSubtype_STS, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_STS, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_STS, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_STS, CGbqualType::e_Usedin );

    // TATA_signal
    Associate( CSeqFeatData::eSubtype_TATA_signal, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_TATA_signal, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_TATA_signal, CGbqualType::e_Usedin );

    // terminator
    Associate( CSeqFeatData::eSubtype_terminator, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_terminator, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_terminator, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_terminator, CGbqualType::e_Usedin );

    // transit_peptide
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Function );
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Product );
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Standard_name );
    Associate( CSeqFeatData::eSubtype_transit_peptide, CGbqualType::e_Usedin );

    // unsure
    Associate( CSeqFeatData::eSubtype_unsure, CGbqualType::e_Label );
    Associate( CSeqFeatData::eSubtype_unsure, CGbqualType::e_Map );
    Associate( CSeqFeatData::eSubtype_unsure, CGbqualType::e_Replace );