blast_dust.h

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: blast_dust.h,v $
 * PRODUCTION Revision 1000.2  2004/06/01 18:03:20  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: blast_dust.h,v 1000.2 2004/06/01 18:03:20 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's offical duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 * 
 * Author: Ilya Dondoshansky
 *
 */

/** @file blast_dust.h
 * DUST filtering functions. (shouldn't this be merged with blast_filter?)
 * @todo FIXME: include reference?
 */

#ifndef __BLAST_DUST__
#define __BLAST_DUST__

#ifdef __cplusplus
extern "C" {
#endif

#include <algo/blast/core/blast_def.h>

Int2 SeqBufferDust (Uint1* sequence, Int4 length, Int4 offset,
                    Int2 level, Int2 window, Int2 minwin, Int2 linker,
                    BlastSeqLoc** dust_loc);

#ifdef __cplusplus
}
#endif
#endif /* !__BLAST_FILTER__ */