textseq_id.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: Textseq_id.hpp,v $
 * PRODUCTION Revision 1000.0  2003/10/29 21:05:05  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R1.8
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: Textseq_id.hpp,v 1000.0 2003/10/29 21:05:05 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  .......
 *
 * File Description:
 *   .......
 *
 * Remark:
 *   This code was originally generated by application DATATOOL
 *   using specifications from the ASN data definition file
 *   'seqloc.asn'.
 *
 * ---------------------------------------------------------------------------
 * $Log: Textseq_id.hpp,v $
 * Revision 1000.0  2003/10/29 21:05:05  gouriano
 * PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R1.8
 *
 * Revision 1.8  2003/02/06 22:23:29  vasilche
 * Added CSeq_id::Assign(), CSeq_loc::Assign().
 * Added int CSeq_id::Compare() (not safe).
 * Added caching of CSeq_loc::GetTotalRange().
 *
 * Revision 1.7  2002/12/26 12:43:42  dicuccio
 * Added Win32 export specifiers
 *
 * Revision 1.6  2001/08/31 16:00:36  clausen
 * Added new constructors for FastA construction.
 *
 * Revision 1.5  2001/06/25 18:52:02  grichenk
 * Prohibited copy constructor and assignment operator
 *
 * Revision 1.4  2000/12/08 22:18:41  ostell
 * changed MakeFastString to AsFastaString and to use ostream instead of string
 *
 * Revision 1.3  2000/12/08 20:45:56  ostell
 * added MakeFastaString()
 *
 * Revision 1.2  2000/11/30 21:53:39  ostell
 * typo fixed
 *
 * Revision 1.1  2000/11/30 18:40:23  ostell
 * added Textseq_id.Match
 *
 *
 * ===========================================================================
 */

#ifndef OBJECTS_SEQLOC_TEXTSEQ_ID_HPP
#define OBJECTS_SEQLOC_TEXTSEQ_ID_HPP


// generated includes
#include <objects/seqloc/Textseq_id_.hpp>

// generated classes

BEGIN_NCBI_SCOPE

BEGIN_objects_SCOPE // namespace ncbi::objects::

class NCBI_SEQLOC_EXPORT CTextseq_id : public CTextseq_id_Base
{
    typedef CTextseq_id_Base Tparent;

public:
    // 'ctors
    CTextseq_id(void);
    CTextseq_id(const string& acc,
                const string& name,
                const string& version,
                const string& release  = kEmptyStr,
                bool allow_dot_version = true);
    CTextseq_id(const string& acc,
                const string& name,
                int           version  = 0,
                const string& release  = kEmptyStr,
                bool allow_dot_version = true);
    virtual ~CTextseq_id(void);


    // Comparison function
    bool Match(const CTextseq_id& tsip2) const;
    int Compare(const CTextseq_id& tsip2) const;
    bool operator<(const CTextseq_id& tsip2) const;

    // Format the contents FASTA string style
    ostream& AsFastaString(ostream& s) const;

private:
    void x_Init(const string& acc,
                const string& name,
                int           version,
                const string& release,
                bool          is_nucore3);

    // Prohibit copy constructor & assignment operator
    CTextseq_id(const CTextseq_id&);
    CTextseq_id& operator= (const CTextseq_id&);
};



/////////////////// CTextseq_id inline methods

// constructor
inline
CTextseq_id::CTextseq_id(void)
{
}


inline
bool CTextseq_id::operator<(const CTextseq_id& tsip2) const
{
    return Compare(tsip2) < 0;
}


/////////////////// end of CTextseq_id inline methods

END_objects_SCOPE // namespace ncbi::objects::

END_NCBI_SCOPE


#endif // OBJECTS_SEQLOC_TEXTSEQ_ID_HPP
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