packed_seqint.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: Packed_seqint.hpp,v $
 * PRODUCTION Revision 1000.1  2004/04/12 17:24:01  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.6
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: Packed_seqint.hpp,v 1000.1 2004/04/12 17:24:01 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  .......
 *
 * File Description:
 *   .......
 *
 * Remark:
 *   This code was originally generated by application DATATOOL
 *   using specifications from the ASN data definition file
 *   'seqloc.asn'.
 */

#ifndef OBJECTS_SEQLOC_PACKED_SEQINT_HPP
#define OBJECTS_SEQLOC_PACKED_SEQINT_HPP


// generated includes
#include <objects/seqloc/Packed_seqint_.hpp>
#include <util/range.hpp>

// generated classes

BEGIN_NCBI_SCOPE

BEGIN_objects_SCOPE // namespace ncbi::objects::

class CSeq_id;

class NCBI_SEQLOC_EXPORT CPacked_seqint : public CPacked_seqint_Base
{
    typedef CPacked_seqint_Base Tparent;
public:
    typedef CSeq_id                    TId;
    typedef ENa_strand                 TStrand;
    typedef vector< CRange<TSeqPos> >  TRanges;

    // constructor
    CPacked_seqint(void);
    CPacked_seqint(TId& id, const TRanges& ivals, TStrand strand = eNa_strand_unknown);

    // destructor
    ~CPacked_seqint(void);

    // get the length of the pieces
    TSeqPos GetLength(void) const;

    /// for convenience
    void AddInterval(const CSeq_interval& ival);
    void AddInterval(const CSeq_id& id, TSeqPos from, TSeqPos to,
                     ENa_strand strand = eNa_strand_unknown);
    void AddIntervals(const CPacked_seqint& ivals);
    void AddIntervals(const Tdata& ivals);

private:
    // Prihibit copy constructor & assignment operator
    CPacked_seqint(const CPacked_seqint&);
    CPacked_seqint& operator= (const CPacked_seqint&);
};



/////////////////// CPacked_seqint inline methods

// constructor
inline
CPacked_seqint::CPacked_seqint(void)
{
}

/////////////////// end of CPacked_seqint inline methods


END_objects_SCOPE // namespace ncbi::objects::

END_NCBI_SCOPE

/*
 * ===========================================================================
 *
 * $Log: Packed_seqint.hpp,v $
 * Revision 1000.1  2004/04/12 17:24:01  gouriano
 * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.6
 *
 * Revision 1.6  2004/01/28 17:14:55  shomrat
 * Added methods to ease the construction of objects
 *
 * Revision 1.5  2003/08/11 14:39:00  ucko
 * +AddInterval; CVS log to end
 *
 * Revision 1.4  2002/12/26 12:43:42  dicuccio
 * Added Win32 export specifiers
 *
 * Revision 1.3  2002/05/03 21:28:04  ucko
 * Introduce T(Signed)SeqPos.
 *
 * Revision 1.2  2001/06/25 18:52:01  grichenk
 * Prohibited copy constructor and assignment operator
 *
 * Revision 1.1  2000/11/17 21:35:02  vasilche
 * Added GetLength() method to CSeq_loc class.
 *
 *
 * ===========================================================================
 */

#endif // OBJECTS_SEQLOC_PACKED_SEQINT_HPP