prot_product.hpp

来自「ncbi源码」· HPP 代码 · 共 148 行

/*
 * ===========================================================================
 * PRODUCTION $Log: prot_product.hpp,v $
 * PRODUCTION Revision 1000.0  2004/06/01 19:55:47  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.4
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_OBJUTILS___PROT_PRODUCT__HPP
#define GUI_OBJUTILS___PROT_PRODUCT__HPP

/*  $Id: prot_product.hpp,v 1000.0 2004/06/01 19:55:47 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vlad Lebedev
 *
 * File Description:
 *   CLayoutProtProd -- utility class to layout protein products
 */


#include <corelib/ncbiobj.hpp>
//#include <gui/core/types.hpp>
#include <gui/objutils/feature.hpp>

#include <objmgr/bioseq_handle.hpp>


/** @addtogroup GUI_OBJUTILS
 *
 * @{
 */


BEGIN_NCBI_SCOPE


class NCBI_GUIOBJUTILS_EXPORT CLayoutProtProd : public CLayoutFeat
{
public:
    // ctor
    CLayoutProtProd(objects::CScope& scope,
                    const objects::CMappedFeat& feat);

    // Retrieve the feature as an object.  For safety's sake,
    // this returns the remapped feature.
    const CObject* GetObject(TSeqPos pos) const;
    bool HasObject(const CObject* obj) const;

    // retrieve the type of this object
    EType GetType() const;

private:

    // handle of the bioseq that holds the protein
    objects::CBioseq_Handle m_Handle;
};


inline
CLayoutProtProd::EType CLayoutProtProd::GetType() const
{
    return eFeatProtProduct;
}



END_NCBI_SCOPE

/* @} */



/*
 * ===========================================================================
 * $Log: prot_product.hpp,v $
 * Revision 1000.0  2004/06/01 19:55:47  gouriano
 * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.4
 *
 * Revision 1.4  2004/05/14 14:24:47  dicuccio
 * Added new pure virtual requirement on CLayoutObject(): GetType(), returns enum
 * defined in CLayoutObject
 *
 * Revision 1.3  2004/05/03 13:34:54  dicuccio
 * FIxed include guards, doxygen groups
 *
 * Revision 1.2  2004/05/03 12:41:35  dicuccio
 * Fixed #includes and export specifiers
 *
 * Revision 1.1  2004/04/30 11:52:53  dicuccio
 * Split out from gui/utils
 *
 * Revision 1.8  2004/04/16 14:27:17  dicuccio
 * Added doxygen module tag
 *
 * Revision 1.7  2004/04/15 12:57:43  lebedev
 * Changed GetObject to return NULL or const pointer based on given position
 *
 * Revision 1.6  2003/09/29 15:20:08  dicuccio
 * Deprecated gui/scope.hpp.  Merged gui/core/types.hpp into gui/types.hpp
 *
 * Revision 1.5  2003/08/22 15:57:11  dicuccio
 * Removed 'USING_SCOPE(objects)'.  Removed export specifier from inline structs
 *
 * Revision 1.4  2003/08/18 14:53:26  dicuccio
 * Changed nales: CFeature -> CLayoutFeat; CAlignment -> CLayoutAlign; CGraph ->
 * CLayoutGraph; CProtProduct -> CLayoutProtProd.
 * Removed USING_SCOPE(objects);
 *
 * Revision 1.3  2003/07/24 13:11:24  dicuccio
 * Changed CLayoutProtProd to return the protein bioseq as its object, not the CDS
 * from which it originated
 *
 * Revision 1.2  2003/07/21 19:24:09  dicuccio
 * Changed storage mechanism: CLayoutObject::GetObject() is pure virtual.  Also,
 * CFeature now stores a CMappedFeat object instead of a CSeq_feat / CSeq_loc pair
 *
 * Revision 1.1  2003/07/18 13:33:52  lebedev
 * Initial revision
 *
 * ===========================================================================
 */

#endif  // GUI_OBJUTILS___PROT_PRODUCT__HPP