cross_aln_ds.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: cross_aln_ds.hpp,v $
 * PRODUCTION Revision 1000.0  2004/04/12 18:22:54  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.2
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP
#define GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP

/*  $Id: cross_aln_ds.hpp,v 1000.0 2004/04/12 18:22:54 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vlad Lebedev
 *
 * File Description:
 *   Data source for Cross Alignment Widget 
 *   (see <gui/widgets/aln_crossaln/cross_aln_widget.hpp>)
 *
 */

#include <gui/gui.hpp>
#include <gui/widgets/hit_matrix/hit_matrix_ds.hpp>



BEGIN_NCBI_SCOPE


class NCBI_GUIWIDGETS_ALNCROSSALN_EXPORT CCrossAlnDataSource 
    : public CHitMatrixDataSource
{
public:
    CCrossAlnDataSource(const CSeq_align_set& aset, CScope& scope);
    CCrossAlnDataSource(const CSeq_annot& annot, CScope& scope);
    virtual ~CCrossAlnDataSource();
    
    /// selects query and subject from the set of available sequences
    bool SelectIds(const TIdRef& q_id, const TIdRef& s_id);
    
    TSignedSeqPos GetOffset()       const;
    const TSeqRange& GetQueryRange()   const;
    const TSeqRange& GetSubjectRange() const;
    const TSeqRange& GetTotalRange()   const;

protected:
    TSignedSeqPos m_Offset;
    TSeqRange        m_TotalRange;
    TSeqRange        m_QueryRange;
    TSeqRange        m_SubjectRange;
};



END_NCBI_SCOPE



/*
 * ===========================================================================
 * $Log: cross_aln_ds.hpp,v $
 * Revision 1000.0  2004/04/12 18:22:54  gouriano
 * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.2
 *
 * Revision 1.2  2004/03/11 17:21:37  dicuccio
 * Use TSeqRange instead of TRange.  Deprecated TIndex, TDimension, TPosition.
 * Corrected use of constructor - add default NULL const char* label
 *
 * Revision 1.1  2003/12/22 13:10:44  lebedev
 * Initial revision
 *
 * ===========================================================================
 */


#endif  /* GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP */