aln_table_ds.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: aln_table_ds.hpp,v $
 * PRODUCTION Revision 1000.0  2004/04/16 19:22:30  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP
#define GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP

/*  $Id: aln_table_ds.hpp,v 1000.0 2004/04/16 19:22:30 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <objmgr/scope.hpp>
#include <objects/seqalign/Seq_align.hpp>


BEGIN_NCBI_SCOPE


struct SAlnProxy
{
    CConstRef<objects::CSeq_align> align;
    mutable CRef<objects::CScope> scope;
};


class NCBI_GUIWIDGETS_ALNCROSSALN_EXPORT CAlnTableDS : public CObject
{
public:
    typedef SAlnProxy TAlnProxy;
    typedef list<TAlnProxy> TAlignments;


    CAlnTableDS(objects::CScope& scope,
                const objects::CSeq_loc& loc);
    CAlnTableDS(objects::CScope& scope,
                const objects::CSeq_annot& annot);
    CAlnTableDS(objects::CScope& scope,
                const objects::CSeq_align& align);
    CAlnTableDS(objects::CScope& scope,
                const objects::CSeq_align_set& aligns);
    CAlnTableDS(objects::CScope& scope,
                const list< CConstRef<objects::CSeq_align> >& aligns);

    void Add(objects::CScope& scope, const objects::CSeq_align& aln);

    const TAlignments& GetAlignments(void) const;

private:
    TAlignments m_Alignments;
};



END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: aln_table_ds.hpp,v $
 * Revision 1000.0  2004/04/16 19:22:30  gouriano
 * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
 *
 * Revision 1.1  2004/04/16 15:57:04  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */

#endif  // GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP