phylo_tree_node.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: phylo_tree_node.hpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 19:52:57  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.4
 * PRODUCTION
 * ===========================================================================
 */

#if !defined(AFX_PHYLO_TREE_NODE_HPP__2F61D68C_0454_4BD0_89F2_037863D53E27__INCLUDED_)
#define AFX_PHYLO_TREE_NODE_HPP__2F61D68C_0454_4BD0_89F2_037863D53E27__INCLUDED_

/*  $Id: phylo_tree_node.hpp,v 1000.1 2004/06/01 19:52:57 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vladimir Tereshkov
 *
 * File Description:
 *
 */

#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <corelib/ncbi_tree.hpp>
#include <serial/serialbase.hpp>
#include <serial/stdtypes.hpp>

BEGIN_NCBI_SCOPE


class CPhyloTreeNode : public CTreeNode<CPhyloTreeNode*>                       
{
private:
    // primary node data
    string  m_Label;
    double  m_Distance; 

    // visualization data  
    int                    m_ID;
    pair <double, double>  m_XY;    
    pair <int, int>        m_IDX;
    double                 m_Alpha;
    bool                   m_Selected;

    // useful for visualization params
    // = ( leaves of current node / leaves of parent node ) * annulus wedge of parent
    // for root let it be 360 - which will make sense for radial tree
    double                 m_AnnWedge;    

    void x_CountLeafs(CPhyloTreeNode * node, Int4 & lfCount);

public:  
    CPhyloTreeNode();
    CPhyloTreeNode(int id, string label, double dist);
	virtual ~CPhyloTreeNode();

    const string & GetLabel(void) const;
    const double   GetDistance(void) const;
    const double   GetDistFromRoot(void) const;
    
    void SetLabel(string label);
    void SetDistance(double dist);    
    
    pair <double, double>  & XY(void)   { return m_XY;  }
    pair <int, int>        & IDX(void)  { return m_IDX; }  

    bool GetSelected(void)              { return m_Selected; }
    void SetSelected(bool bSel)         { m_Selected = bSel; }

    double GetAnnWedge(void)            { return m_AnnWedge;  }
    void   SetAnnWedge(double wedge)    { m_AnnWedge = wedge; }

    double GetAngle(void)               { return m_Alpha;  }
    void   SetAngle(double angle)       { m_Alpha = angle; }

    int    GetID(void)                  { return m_ID;     }
    void   SetID(int id)                { m_ID = id;       }


    // function counts amount of end-leafs in childs
    Int4   CountLeafs(void);
};



END_NCBI_SCOPE

/*
 * ===========================================================================
 * $Log: phylo_tree_node.hpp,v $
 * Revision 1000.1  2004/06/01 19:52:57  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.4
 *
 * Revision 1.4  2004/04/28 19:27:27  tereshko
 * Added support for distances rendering
 *
 * Revision 1.3  2004/03/30 17:11:08  tereshko
 * Added support for events broadcasting
 *
 * Revision 1.2  2004/03/02 18:28:50  tereshko
 * Added support for calculating annual vertex weight
 *
 * Revision 1.1  2004/02/13 16:59:59  tereshko
 * Phylogenetic Tree Widget initial revision
 *
 * ===========================================================================
 */

#endif // !defined(AFX_PHYLO_TREE_NODE_HPP__2F61D68C_0454_4BD0_89F2_037863D53E27__INCLUDED_)