phylo_tree_ds.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: phylo_tree_ds.hpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 19:52:54  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_WIDGETS_PHYLO_TREE__PHYLO_TREE_DS_HPP
#define GUI_WIDGETS_PHYLO_TREE__PHYLO_TREE_DS_HPP

/*  $Id: phylo_tree_ds.hpp,v 1000.1 2004/06/01 19:52:54 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vladimir Tereshkov
 *
 * File Description:
 *
 */


#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <corelib/ncbi_tree.hpp>
#include <gui/widgets/phylo_tree/phylo_tree_node.hpp>
#include <gui/widgets/phylo_tree/phylo_tree_reader.hpp>
#include <gui/opengl/glpane.hpp>
#include <algo/phy_tree/phy_tree_serial.hpp>
#include <objmgr/scope.hpp>

BEGIN_NCBI_SCOPE

class  NCBI_GUIWIDGETS_PHYLO_TREE_EXPORT CPhyloTreeDataSource : public CObject
{
public:    
    typedef map<int, CPhyloTreeNode *> TNodeHash;
    typedef CPhyTreeSerial::TIds TIds;

    CPhyloTreeDataSource();    
    CPhyloTreeDataSource(IPhyloTreeReader * reader);
    CPhyloTreeDataSource(TPhyTreeNode& node,
                         const TIds& seqids, 
                         objects::CScope& scope);

    virtual ~CPhyloTreeDataSource();        

    void Init(IPhyloTreeReader * reader);
    void Init(TPhyTreeNode & node,  CPhyloTreeNode * pos); 

    CPhyloTreeNode* GetTree(void);
    Int4 GetWidth(void) { return m_Width; }
    Int4 GetSize(void)  { return m_Size; }    
    void SetSelection(CPhyloTreeNode * node, bool bSel,
                      bool andChilds = true, bool checkParents = true);

    vector<int> GetSelectedIds(void) const;    
    
    TIds ConvertId2SeqId(const vector<int> & ids);

    vector<int> ConvertSeqId2Id(const TIds& seqids);

    TNodeHash& GetHash(void) { return m_Hash; }
    CPhyloTreeNode* GetNode(int idx);    

    // returning calculated bounding rectangle
    const TModelRect GetBoundRect(void);

    // returning norm distance
    const double GetNormDistance(bool fromRoot=true);

private:
    int m_Level;    

    CPhyloTreeNode* m_Root;

    TNodeHash m_Hash; 
    
    int m_Width;
    int m_Size;

    TIds       m_SeqIds;    

    CRef<objects::CScope>    m_Scope;
    
    void x_MeasureTree(CPhyloTreeNode * node);  
    void x_DescentToChilds(CPhyloTreeNode * node, bool bSel);
    void x_AscendToRoot(CPhyloTreeNode * node, bool bSel);
};



END_NCBI_SCOPE

/*
 * ===========================================================================
 * $Log: phylo_tree_ds.hpp,v $
 * Revision 1000.1  2004/06/01 19:52:54  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 *
 * Revision 1.10  2004/05/11 20:53:38  tereshko
 * Work in progress
 *
 * Revision 1.9  2004/04/28 19:27:27  tereshko
 * Added support for distances rendering
 *
 * Revision 1.8  2004/04/16 14:33:59  dicuccio
 * Formatting changes.  Added typedefs for IDs, node map
 *
 * Revision 1.7  2004/04/13 20:29:22  tereshko
 * Numerous renderers improvements
 *
 * Revision 1.6  2004/04/02 16:20:29  yazhuk
 * Replaced vector<CRef<>> with vector<CConstRef<>>, added Scope data member
 *
 * Revision 1.5  2004/04/01 21:47:00  tereshko
 * Added ability of auto-selecting parent nodes
 *
 * Revision 1.4  2004/03/31 17:53:09  tereshko
 * Added function for retrieval of preprocessed selection
 *
 * Revision 1.3  2004/03/30 17:11:08  tereshko
 * Added support for events broadcasting
 *
 * Revision 1.2  2004/02/17 23:44:11  tereshko
 * Changes due to integration into viewer
 *
 * Revision 1.1  2004/02/13 16:59:58  tereshko
 * Phylogenetic Tree Widget initial revision
 *
 * ===========================================================================
 */
#endif