agp_read.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: agp_read.hpp,v $
 * PRODUCTION Revision 1000.0  2004/04/12 17:38:27  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: agp_read.hpp,v 1000.0 2004/04/12 17:38:27 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors: Josh Cherry
 *
 * File Description:  Read agp file
 */


#ifndef OBJTOOLS_READERS___AGP_READ__HPP
#define OBJTOOLS_READERS___AGP_READ__HPP

#include <corelib/ncbistd.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqset/Bioseq_set.hpp>

BEGIN_NCBI_SCOPE

/// Read an agp file from a stream, constructing delta sequences
void NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is,
                                  vector<CRef<objects::CBioseq> >& bioseqs);

/// Same thing, but wrap bioseqs in Seq-entry's.
void NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is,
                                  vector<CRef<objects::CSeq_entry> >& entries);

/// Return a Bioseq-set containing everything.
CRef<objects::CBioseq_set> NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is);

END_NCBI_SCOPE

#endif  // OBJTOOLS_READERS___AGP_READ__HPP

/*
 * =========================================================================
 * $Log: agp_read.hpp,v $
 * Revision 1000.0  2004/04/12 17:38:27  gouriano
 * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
 *
 * Revision 1.1  2003/12/08 15:49:33  jcherry
 * Initial version
 *
 * =========================================================================
 */