evoft.java~

Java遗传算法库

        ConfigurableRandomInputExperiment experiment = new MultiplierExperiment( 2, T_SETUP );
        
        // D - DEPLOYMENT set up
        // SimulatorCircuit circuit = new SimulatorLUTCircuit( SIMULATOR_GATE_DELAY, BITS_PER_VARIABLE , LUT_INPUTS, experiment.getNumOfInputs(), experiment.getNumOfOutputs() );
         //ElementDelayModel delayModel = new ConstantDelayModel( SIMULATOR_GATE_DELAY );
        ElementDelayModel delayModel = new GaussianDelayModel( 0.5, 0.5 );
         CircuitMapping circuitMapping = new LUTAbsoluteMapping( experiment.getNumOfInputs(), experiment.getNumOfOutputs() + 1, BITS_PER_VARIABLE, LUT_INPUTS, delayModel );
         SimulatorFaultyCircuit circuit = new SimulatorFaultyCircuit( circuitMapping );
         SimulatorDeployment deployment = new SimulatorDeployment( circuit );

        // FLEXDeployment deployment = new FLEXDeployment( vFileName,  path2Prog, path2MaxPlus, wrkDir, BITS_PER_VARIABLE, STABILIZERS, GATE_INPUTS, experiment.getNumOfInputs(), experiment.getNumOfOutputs(), PORT_ADD );

        // A - Genetic Operators Set up
        /* For CNAND
         int genotypeLength = GATE_INPUTS * STABILIZERS * ( ( 1 << BITS_PER_VARIABLE ) - experiment.getNumOfInputs() ) * ( BITS_PER_VARIABLE + 1 );        
        */
        int nrEls = ( 1 << BITS_PER_VARIABLE ) - experiment.getNumOfInputs();
         int genotypeLength = nrEls * ( ( 1 << LUT_INPUTS ) + LUT_INPUTS * BITS_PER_VARIABLE );
         int testPatLength = ( 1 << experiment.getNumOfInputs() ) * 2;
         int tpGenLength = testPatLength * experiment.getNumOfInputs();

         //final Genotype SEED0 = new Genotype( "5X6e7R]nn^OmeHUYjQZ9", genotypeLength, 6 );
        // final Genotype SEED1 = new Genotype( "6WS_iRZCj6Y8ELA2eO6ZJ8eMnPDTCdlHHtQFdj95jMhqg7bcFi9PGfu86JVoIpWkQjmvWSX6S[shXWjEjlRQiieI9QV95HvQD6iK\\EHNY\\RKa\\hB5^aF\\3OL9cl3r7r07rdbpQJkrOYaivRCqCK5IWPFM4USapH2mi3_RR2BX[5i^cCfnLZRR]N5t94Ms0iiLfmLuh72feoUuHWV6CHTh[0etY9[[Iv9KTBf`iZZojZteMsirncWvonRShJ0", genotypeLength, 6 );
        // final Genotype SEED2 = new Genotype( "2GS_i17CiQY8ELA2eO6ZJ8eMnPDTC_jrLtUVdjDG8EEQS\\beNi9PKfu87Jjc3jRiaIqH[ALYJsE11WIqSMRIgj04oBe09jKAhLiLaMVU_08qdSQaImCtgaB4cc[3r3raARcfpAJli0jWiJ0kq4Nk0WPF64USqpH2gi3bBKu2]SRe`cCfknjBqEMKTO7Iu5ru1_THNb72V3n6rWD824uaHW0etY9[[Iv9KTBf`gtYM_AhAq6hNldYCEAdb1i0", genotypeLength, 6 );
        // final Genotype[] SEEDS = { SEED0, SEED1, SEED2 };
        // final Genotype[] SEEDS = { SEED0, SEED1 };
        // final Genotype[] SEEDS = { SEED0 };
         final Genotype[] SEEDS = { };
        // final Genotype SEEDTP0 = new Genotype( "GTJqc5eJgQMpdsQijj^llE^Elf[ov_E2`Vj2rIqt[OpfXsGc4n8U`ZS6UXN1p09D", tpGenLength, 6 );
        // final Genotype SEEDTP1 = new Genotype( "UrFEZ7_gVE9iEslS0dMJ51eg3jq4cDF3ume6b5iTQuS[8cVo9blDXNncTLs[VTG^", tpGenLength, 6 );
        // final Genotype[] TP_SEEDS = { SEEDTP0, SEEDTP1 };
         final Genotype[] TP_SEEDS = { };

        // BitMutator bm = new BitMutator( BIT_MUTATION_PROB );
        // GeneticOperator m = new ExactGenotypeMutator( GENOTYPE_MUT );
         GeneticOperator m = new SAGAMutator( 1, 10 );
         //GeneticOperator m = new AdaptiveMutator( 1, genotypeLength / 5 );
        // GeneticOperator tpm = new AdaptiveMutator( 1, tpGenLength / 5 );
         GeneticOperator spxo = new SinglePointXOver();

        // Standard
         GeneticOperator[] geneticOps = { m, spxo };
         double[] opsProbs = { MUTATION_PROB, XOVER_PROB };
         /* 1+1
         GeneticOperator[] geneticOps = { m };
         GeneticOperator[] tpGeneticOps = { tpm };

         double[] opsProbs = { MUTATION_PROB };
         double[] tpOpsProbs = { TP_MUTATION_PROB };
         */
        // Selector selector = new FitnessProportionateSelector();
         Selector selector = new RankSelector(  );


         Evolver evolver = new StandardEvolver( POP_SIZE, genotypeLength, geneticOps, opsProbs, selector, NUM_OF_ELITES, SEEDS );

 
        //SingleFaultModel faultModel = new SingleStaticFaultModel( fPos );
        
        //InteractionModel interactionModel = new StandardInteractionModel( evolver, deployment, experiment );
        //InteractionModel interactionModel = new BISTIM( evolver, deployment, circuit, experiment, faultModel );
        InteractionModel interactionModel = new SimpleMalteadaIM( evolver, circuitMapping, deployment, experiment );
         int[] evolutionFrequency = { 1 , 4 };
         //InteractionModel interactionModel = new CircuitTestPatternIM( evolvers, deployment, experiments, evolutionFrequency );

        Monica monica = new Monica( interactionModel, DUMP_POP_EVERY, java.lang.Integer.MAX_VALUE );

        String dirName = "2MultSimpleMalteada-" + id;
        monica.setName( dirName );
        taskQ.add( monica );
        taskQNames.add( dirName );
        ControlLib.writeGNUPlotScript( dirName, logDir, logFileName, 0 );
    }
    
    
    private static void addAdd1Malt( int id )
    {

        // A - Genetic Algorithms Properties
        // Standard
         final int POP_SIZE = 32;
         final int TP_POP_SIZE = 7;
         final double BIT_MUTATION_PROB = 0.05;
         final int GENOTYPE_MUT = 1;
         final double XOVER_PROB = 0.4;
         final double ALIEN_PROB = 0;
         final double WIRE_SWAP_PROB = 0.7;
         final double MUTATION_PROB = 0.6;
         final int NUM_OF_ELITES = 2;

         final double TP_XOVER_PROB = 0.5;
         final double TP_MUTATION_PROB = 0.5;
         final int TP_NUM_OF_ELITES = 2;

        final double[] TP_RANK_PROBS = { 8d, 4d, 2d, 1d };

        /* 1+1
         final int POP_SIZE = 2;
         final int TP_POP_SIZE = 2;
         final double BIT_MUTATION_PROB = 0.05;
         final int GENOTYPE_MUT = 2;
         final double XOVER_PROB = 0;
         final double MUTATION_PROB = 1;
         final int NUM_OF_ELITES = 1;

         final double TP_XOVER_PROB = 0;
         final double TP_MUTATION_PROB = 1;
         final int TP_NUM_OF_ELITES = 1;

         final double[] RANK_PROBS = { 1d, 0d };
         final double[] TP_RANK_PROBS = { 1d, 0d };
        */
        // D -  Circuit Structure Properties
         final int BITS_PER_VARIABLE = 4;
         final int LUT_INPUTS = 2;

        /* For NANDC
         final int BITS_PER_VARIABLE = 5;
         final int STABILIZERS = 1;
         final int GATE_INPUTS = 2;
        */

        // D - Simulator Properties
         final int SIMULATOR_GATE_DELAY = 1;
         final double T_SETUP = 0.45;
        // final int INPUT_SAMPLE_SEPARATION = 1;

        // E - Experiment Properties
         final int TEST_LENGTH = 50;

        // M - Log Properties
         int DUMP_POP_EVERY = 60;

        // E - EXPERIMENT set up
        BooleanFunction boolFunQ = new Add1bitQFun();
        BooleanFunction boolFunC = new Add1bitCFun();
        // BooleanFunction boolFun = new MUXFunction( 2 , 4 );
        // BooleanFunction boolFun = new VertorHorizFun();
        // BooleanFunction boolFun = new FLEXToneDetectFun();
         Experiment experimentQ = new ArbitraryFunctionExperiment( boolFunQ, T_SETUP );
        Experiment experimentC = new ArbitraryFunctionExperiment( boolFunC, T_SETUP );
        Experiment[] exps = { experimentQ, experimentC };
        Experiment experiment = new MultiOutputExperiment( exps );
        
         Experiment tpexp = new TestPattern4EvolvingExperiment( experiment );

        // D - DEPLOYMENT set up
        // SimulatorCircuit circuit = new SimulatorLUTCircuit( SIMULATOR_GATE_DELAY, BITS_PER_VARIABLE , LUT_INPUTS, experiment.getNumOfInputs(), experiment.getNumOfOutputs() );
         //ElementDelayModel delayModel = new ConstantDelayModel( SIMULATOR_GATE_DELAY );
        ElementDelayModel delayModel = new GaussianDelayModel( 0.5, 0.5 );
         CircuitMapping circuitMapping = new LUTAbsoluteMapping( experiment.getNumOfInputs(), experiment.getNumOfOutputs() + 1, BITS_PER_VARIABLE, LUT_INPUTS, delayModel );
         SimulatorFaultyCircuit circuit = new SimulatorFaultyCircuit( circuitMapping );
         SimulatorDeployment deployment = new SimulatorDeployment( circuit );

        // FLEXDeployment deployment = new FLEXDeployment( vFileName,  path2Prog, path2MaxPlus, wrkDir, BITS_PER_VARIABLE, STABILIZERS, GATE_INPUTS, experiment.getNumOfInputs(), experiment.getNumOfOutputs(), PORT_ADD );

        // A - Genetic Operators Set up
        /* For CNAND
         int genotypeLength = GATE_INPUTS * STABILIZERS * ( ( 1 << BITS_PER_VARIABLE ) - experiment.getNumOfInputs() ) * ( BITS_PER_VARIABLE + 1 );        
        */
        int nrEls = ( 1 << BITS_PER_VARIABLE ) - experiment.getNumOfInputs();
         int genotypeLength = nrEls * ( ( 1 << LUT_INPUTS ) + LUT_INPUTS * BITS_PER_VARIABLE );
         int testPatLength = ( 1 << experiment.getNumOfInputs() ) * 2;
         int tpGenLength = testPatLength * experiment.getNumOfInputs();

         //final Genotype SEED0 = new Genotype( "5X6e7R]nn^OmeHUYjQZ9", genotypeLength, 6 );
        // final Genotype SEED1 = new Genotype( "6WS_iRZCj6Y8ELA2eO6ZJ8eMnPDTCdlHHtQFdj95jMhqg7bcFi9PGfu86JVoIpWkQjmvWSX6S[shXWjEjlRQiieI9QV95HvQD6iK\\EHNY\\RKa\\hB5^aF\\3OL9cl3r7r07rdbpQJkrOYaivRCqCK5IWPFM4USapH2mi3_RR2BX[5i^cCfnLZRR]N5t94Ms0iiLfmLuh72feoUuHWV6CHTh[0etY9[[Iv9KTBf`iZZojZteMsirncWvonRShJ0", genotypeLength, 6 );
        // final Genotype SEED2 = new Genotype( "2GS_i17CiQY8ELA2eO6ZJ8eMnPDTC_jrLtUVdjDG8EEQS\\beNi9PKfu87Jjc3jRiaIqH[ALYJsE11WIqSMRIgj04oBe09jKAhLiLaMVU_08qdSQaImCtgaB4cc[3r3raARcfpAJli0jWiJ0kq4Nk0WPF64USqpH2gi3bBKu2]SRe`cCfknjBqEMKTO7Iu5ru1_THNb72V3n6rWD824uaHW0etY9[[Iv9KTBf`gtYM_AhAq6hNldYCEAdb1i0", genotypeLength, 6 );
        // final Genotype[] SEEDS = { SEED0, SEED1, SEED2 };
        // final Genotype[] SEEDS = { SEED0, SEED1 };
        // final Genotype[] SEEDS = { SEED0 };
         final Genotype[] SEEDS = { };
        // final Genotype SEEDTP0 = new Genotype( "GTJqc5eJgQMpdsQijj^llE^Elf[ov_E2`Vj2rIqt[OpfXsGc4n8U`ZS6UXN1p09D", tpGenLength, 6 );
        // final Genotype SEEDTP1 = new Genotype( "UrFEZ7_gVE9iEslS0dMJ51eg3jq4cDF3ume6b5iTQuS[8cVo9blDXNncTLs[VTG^", tpGenLength, 6 );
        // final Genotype[] TP_SEEDS = { SEEDTP0, SEEDTP1 };
         final Genotype[] TP_SEEDS = { };

        // BitMutator bm = new BitMutator( BIT_MUTATION_PROB );
        // GeneticOperator m = new ExactGenotypeMutator( GENOTYPE_MUT );
         GeneticOperator m = new SAGAMutator( 1, 10 );
         //GeneticOperator m = new AdaptiveMutator( 1, genotypeLength / 5 );
        // GeneticOperator tpm = new AdaptiveMutator( 1, tpGenLength / 5 );
         GeneticOperator tpm = new ExactGenotypeMutator( GENOTYPE_MUT );
        // GeneticOperator ws = new WireSwapper( BITS_PER_VARIABLE, STABILIZERS );
         GeneticOperator spxo = new SinglePointXOver();
         GeneticOperator tpspxo = new SinglePointXOver();

        // Standard
         GeneticOperator[] geneticOps = { m, spxo };
         GeneticOperator[] tpGeneticOps = { tpm, tpspxo };

         double[] opsProbs = { MUTATION_PROB, XOVER_PROB };
         double[] tpOpsProbs = { TP_MUTATION_PROB, TP_XOVER_PROB };
        
         /* 1+1
         GeneticOperator[] geneticOps = { m };
         GeneticOperator[] tpGeneticOps = { tpm };

         double[] opsProbs = { MUTATION_PROB };
         double[] tpOpsProbs = { TP_MUTATION_PROB };
         */
        // Selector selector = new FitnessProportionateSelector();
         Selector selector = new RankSelector(  );
        // Selector tpSelector = new FitnessProportionateSelector();
        // Selector tpSelector = new RankSelector( TP_RANK_PROBS );
         Selector tpSelector = new RankSelector( TP_RANK_PROBS );

         Evolver evolver = new StandardEvolver( POP_SIZE, genotypeLength, geneticOps, opsProbs, selector, NUM_OF_ELITES, SEEDS );
         Evolver tpEvolver = new StandardEvolver( TP_POP_SIZE, tpGenLength, tpGeneticOps, tpOpsProbs, tpSelector, TP_NUM_OF_ELITES, TP_SEEDS );

         Evolver[] evolvers = { evolver, tpEvolver };
         Experiment[] experiments = { experiment, tpexp };

        //SingleFaultModel faultModel = new SingleStaticFaultModel( fPos );
        
        //InteractionModel interactionModel = new StandardInteractionModel( evolver, deployment, experiment );
        //InteractionModel interactionModel = new BISTIM( evolver, deployment, circuit, experiment, faultModel );
        InteractionModel interactionModel = new MalteadaIM( evolver, deployment, circuit, experiment, nrEls );
         int[] evolutionFrequency = { 1 , 4 };
         //InteractionModel interactionModel = new CircuitTestPatternIM( evolvers, deployment, experiments, evolutionFrequency );

        Monica monica = new Monica( interactionModel, DUMP_POP_EVERY, java.lang.Integer.MAX_VALUE );

        String dirName = "Add1Malteada-" + id;
        monica.setName( dirName );
        taskQ.add( monica );
        taskQNames.add( dirName );
        ControlLib.writeGNUPlotScript( dirName, logDir, logFileName, 2 );
    }

}