pr00058_res.txt

greedy em 混和模型训练算法

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.2308 0.0000 0.0000 0.0000 0.0000 0.0769 0.0000 0.0000 0.0000 0.0000 0.0000 0.6153 0.0000 0.0769 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0769 0.0000 0.0000 0.0000 0.0000 0.0000 0.1538 0.1538 0.0000 0.0000 0.0769 0.0000 0.0769 0.1538 0.0000 0.0000 0.3077 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1538 0.0000 0.0000 0.2308 0.0000 0.0000 0.0000 0.1538 0.0769 0.0000 0.3846 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.2308 0.6923 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0769 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.3077 0.6923 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0769 0.9230 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.5384 0.4615 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.6153 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3077 0.0769 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.2308 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7692 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8461 0.0000 0.0000 0.0000 0.0000 0.1538 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5384 0.0000 0.0000 0.0000 0.0000 0.0000 0.3846 0.0769 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0769 0.0000 0.0000 0.0000 0.9230 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.1538 0.0000 0.0000 0.2308 0.0000 0.0000 0.0000 0.0000 0.5384 0.0769 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0769 0.0000 0.0000 0.0000 0.0000 0.1538 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7692 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9230 0.0000 0.0769 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +5.999e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 +1.663e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -3.775e+001 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +2.835e+002 -1.367e+003 +5.751e+001 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 +7.767e+000 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.146e+002 +3.298e+002 -1.367e+003 -1.367e+003 +1.291e+002 -1.367e+003 +9.385e+001 +1.575e+002 -1.367e+003 -1.367e+003 +2.243e+002 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +3.846e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
+7.230e+001 -1.367e+003 -1.367e+003 +1.663e+002 -1.367e+003 -1.367e+003 -1.367e+003 +1.832e+002 -3.775e+001 -1.367e+003 +4.620e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 +1.966e+002 +3.248e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.291e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 +2.381e+002 +3.248e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 +4.081e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 +3.808e+001 +3.663e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 +3.188e+002 +2.663e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
+2.723e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.835e+002 +9.385e+001 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +2.611e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +3.565e+002 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +3.082e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +2.291e+002 -1.367e+003 -1.366e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.366e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +2.430e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +2.157e+002 +9.385e+001 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.366e+003 -1.367e+003 -1.367e+003 -1.367e+003 +4.991e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +4.726e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.366e+003 -1.367e+003 -1.367e+003 +1.114e+002 -1.367e+003 -1.367e+003 -1.367e+003 +4.523e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.141e+002 -1.367e+003 -1.367e+003 +1.207e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +4.098e+002 -1.646e+001 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.026e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +1.146e+002 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +3.565e+002 
-1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 +4.417e+002 -1.367e+003 +1.456e+001 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 -1.367e+003 

 Motif 8 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    186    ETEELDDETLRKYIYGGHVA
 2    185    ESKEFNPEVHRKHIFAQNVA
 3    186    ETEELDDETLRKYIYGGHVA
 4    185    ESKEFNPEVHRKHIFAQNIA
 5    186    ENKSFNAEMHRDHIFGLHVA
 6    186    ESKKFNAEVHRAHIFGLHVA
 7    185    ESKEYNAEAHRDRILGKHVA
 8    185    ESKEFNAEVHRKHIMGQNVA
 10    186    ESKEFNADVHRQHIFGQHVA
 11    185    ESKEFNAEVHRKHIMGQNVA
 12    189    ESEELDAETLKKYIFGGHVA
 13    186    DEKQLDSDIHRKYIYGGHVA
 14    185    ESKEFNAEVHRKHIMGQNVA
 15    185    ESGDFSAEVHRSHIFGGHVS
 16    186    ETEEIDPELLRSYIFGGHVS

Consensus:   ESKEFNAEVHRKHIFGGHVA 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0667 0.9333 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.6666 0.2000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.2667 0.0000 0.0667 0.0000 0.0000 0.6666 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0667 0.7333 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.6000 0.0000 0.0000 0.0667 0.0000 0.2667 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 
0.0000 0.0000 0.3333 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 
0.6000 0.0000 0.1333 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.1333 0.8666 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0667 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0667 0.0667 0.0000 0.0000 0.0000 0.0000 0.0000 0.2000 0.5333 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7333 0.0000 0.0000 0.2667 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 0.0000 0.9333 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0667 0.0000 0.1333 0.0000 0.0000 0.0000 0.0000 0.0000 0.6000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.1333 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 0.3333 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.5333 0.0000 0.0000 0.0000 0.0000 0.0667 0.2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2000 
0.1333 0.0000 0.0000 0.0000 0.0000 0.8666 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.4000 0.0000 0.0000 0.0667 0.1333 0.0000 0.0000 0.0000 0.4000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6666 0.0000 0.0000 0.0000 0.0000 0.3333 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0667 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9333 0.0000 0.0000 
0.8666 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1333 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.387e+003 -1.387e+003 +1.743e+001 +3.678e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 -1.288e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +9.077e+001 -1.387e+003 -1.387e+003 -1.387e+003 +4.054e+002 +1.954e+002 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 +1.871e+002 -1.387e+003 -6.504e+000 -1.387e+003 -1.387e+003 +2.738e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 +1.743e+001 +3.331e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -5.839e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +1.084e+002 -1.387e+003 +7.321e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +3.989e+002 -1.387e+003 -1.387e+003 +6.253e+001 -1.387e+003 +1.939e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +3.665e+000 
-1.387e+003 -1.387e+003 +2.496e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +4.078e+002 -1.387e+003 -1.387e+003 -1.387e+003 +7.321e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
+2.686e+002 -1.387e+003 +1.174e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +2.623e+002 -1.387e+003 -1.387e+003 +7.321e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 +1.174e+002 +3.572e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-4.834e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +6.253e+001 -1.387e+003 -6.085e+000 +2.092e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +1.954e+002 +3.148e+002 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +5.066e+002 -1.387e+003 -1.387e+003 +1.939e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -5.839e+001 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +3.436e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-4.834e+001 -1.387e+003 +1.174e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +2.586e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +1.084e+002 -1.387e+003 +1.732e+002 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 
-1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 -1.387e+003 +4.777e+002 -1.387e+003 -1.387e+003 -1.387