pr00058_res.txt

greedy em 混和模型训练算法

 6    8    KNKQYFKRYQVKFKRRREGK
 7    8    KNKAYFKRYQVKLRRRREGK
 8    7    KNKAYFKRYQVKFRRRREGK
 9    8    KTSPYFSRYQVKYRRRRQGK
 10    8    KNKQYFKRYQVKFKRRREGK
 11    7    KNKAYFKRYQVKFRRRREGK
 12    8    KNSAYYSRFQTKYKRRREGK
 13    9    KTNAYYKRFQVKFKRRRQGK
 14    7    KNKAYFKRYQVRFRRRREGK
 15    7    KNKAYFKRYQVKYKRRRQGK
 16    8    KSSAYSSRFQTPFRRRREGK

Consensus:   KNKAYFKRYQVKFRRRREGK 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6875 0.0000 0.0000 0.0000 0.1875 0.1250 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6250 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0000 
0.6250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1875 0.1875 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 
0.0000 0.0000 0.0000 0.0000 0.8125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.1250 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6875 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.1875 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8125 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2500 0.7500 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8125 0.0000 0.0000 0.0000 0.0625 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.6250 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3125 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0000 0.0000 0.6875 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.8125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1875 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.323e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.274e+002 -1.397e+003 -1.397e+003 -1.397e+003 +2.224e+002 +1.276e+002 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.645e+002 -1.397e+003 -1.397e+003 +8.146e+001 -1.397e+003 -1.397e+003 -1.397e+003 +2.961e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
+2.745e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.530e+002 +2.576e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.943e+002 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.427e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +6.390e+001 -1.397e+003 -1.397e+003 -1.397e+003 +9.435e+001 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.782e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.961e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.536e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.311e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.644e+002 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.991e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.276e+002 +3.640e+002 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.023e+002 -1.397e+003 -1.397e+003 -1.397e+003 +9.450e+001 -1.397e+003 +5.358e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.048e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.540e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.265e+002 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +1.645e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.995e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.536e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.536e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.536e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 +3.478e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.576e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.842e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.323e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 

 Motif 5 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    144    VFLDVGLKRTSTGSRVFGAM
 2    143    CYLDAGLTRTTTGNKVFGAL
 3    144    VFLDVGLKRTSTGSRVFGAM
 4    143    CYLDAGLTRTTTGNKVFGAL
 5    144    CYLDVGLARTTTGSRVFGAM
 6    144    CYLDVGLARTTTGRRVFGAM
 7    143    AVLDIGLARTTTGSKIFAVM
 8    143    CYLDAGLARTTTGNKVFGAL
 9    144    CLLDTGLKRTSTGSKVFAAM
 10    144    CYLDVGLMRTTTGARVFGAM
 11    143    CYLDAGLARTTTGNKVFGAL
 12    147    AFLDVGLARTSTGARVFGAM
 13    144    ALLDVGLIRTTTGNRVFGAL
 14    143    CYLDAGLARTTTGNKVFGAL
 15    143    AFLDVGLARTTTGAKVFGAM
 16    144    VFLDIGLQRTTTGARVFGAL

Consensus:   CYLDVGLARTTTGNKVFGAM 

[*] Position Weight Matrix
--------------------------
0.2500 0.5625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1875 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.5000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.3125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.5000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.5000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.1875 0.0000 0.0625 0.0000 0.0000 0.0625 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2500 0.7500 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.2500 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3750 0.0000 0.0000 0.0625 0.3125 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9374 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1250 0.0000 0.0000 0.0000 0.0000 0.8749 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.9374 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4375 0.5625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
+1.423e+002 +5.794e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +1.640e+002 -1.397e+003 -1.397e+003