pr00058_res.txt

greedy em 混和模型训练算法

 Motif 1 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    89    KWGLANWTAAYATGLLVARR
 2    88    KVGLTNYAAAYCTGLLLARR
 3    89    KWGLANWTAAYATGLLVARR
 4    88    KVGLTNYAAAYCTGLLLARR
 5    89    KVGLTNYAAAYCTGLLVARR
 6    89    KVGLTNYAAAYSTGLLLARR
 7    89    KVGLTNYAAAYATGLLLARR
 8    88    KVGLTNYAAAYCTGLLLARR
 9    89    KVGLTNYSAAYCVGLLVARR
 10    89    KVGLTNYAAAYCTGLLLARK
 11    88    KVGLTNYAAAYCTGLLLARR
 12    89    EHGLTNWAAAYATGLLLARR
 13    90    EVGLTNYAAAYCTGLLLARR
 14    88    KVGLTNYAAAYCTGLLLARR
 15    88    KVGLTNYAAAYCTGLLLSRR
 16    89    THGLTNWAAAYATGLLIARR

Consensus:   KVGLTNYAAAYCTGLLLARR 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.8125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7500 0.1250 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8749 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2500 0.7500 
0.8125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.1250 0.0000 0.0000 0.0000 
0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 
0.3125 0.6250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9374 0.0625 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.6875 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2500 0.0000 0.0000 
0.9374 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.9374 0.0000 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.397e+003 -1.397e+003 -1.397e+003 +7.781e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.023e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.756e+001 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.514e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.640e+002 +4.836e+002 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.842e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.846e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
+4.234e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.083e+002 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.815e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +5.836e+002 +3.528e+002 
+3.124e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +6.390e+001 +1.276e+002 -1.397e+003 -1.397e+003 -1.397e+003 
+3.423e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
+3.423e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.943e+002 
+1.745e+002 +5.946e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +6.390e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +4.182e+002 +5.484e+000 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.842e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.846e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.846e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +5.322e+001 -1.397e+003 +3.305e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +2.055e+002 -1.397e+003 -1.397e+003 
+3.330e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +6.390e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.536e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 
-1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -6.770e+001 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 +3.443e+002 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 -1.397e+003 

 Motif 2 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    28    TDYYARKRLIAQAKNKYNAP
 2    27    TDYYARKRLVIQDKNKYNTP
 3    28    TDYYARKRLIAQAKNKYNAP
 4    27    TDYYARKRLVIQDKNKYNTP
 5    28    TDYYARKRLIFQDKNKYNTP
 6    28    TDYYARKRLVVQDKNKYNTP
 7    28    TDYYARKRLTVQDKNKYNTP
 8    27    TDYYARKRLVIQDKNKYNTP
 9    28    TDYRARLRLVRQDKNKYNTH
 10    28    TDYFARKRLIAQDKNKYNTP
 11    27    TDYYARKRLVIQDKNKYNTP
 12    28    TDYYARKRLITQAKNKYNAP
 13    29    TDYRARIRLTNQDKNKYNTP
 14    27    TDYYARKRLVIQDKNKYNTP
 15    27    TDYFARKRLVVQDKNKYNTP
 16    28    TDYYQRKRLVTQHKAKYNTP

Consensus:   TDYYARKRLVIQDKNKYNTP 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 
0.0000 0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1250 0.0000 0.0000 0.0000 0.0000 0.7500 
0.9374 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0625 0.8750 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1250 0.5625 0.0000 0.0000 
0.1875 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.3125 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0625 0.0000 0.1250 0.1875 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1875 0.0000 0.7500 0.0000 0.0000 0.0000 0.0625 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000