artificial_res.txt

greedy em 混和模型训练算法

-1.329e+003 +3.970e+002 -1.329e+003 +7.608e+001 -1.329e+003 +1.071e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +8.933e+001 -1.329e+003 +4.363e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 +9.702e+001 -1.329e+003 +3.931e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 +1.406e+002 -1.329e+003 -1.329e+003 +4.071e+002 -1.329e+003 -1.329e+003 -1.329e+003 +1.079e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 +7.608e+001 +1.467e+002 -1.329e+003 +4.007e+002 -1.329e+003 +1.084e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.006e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 +9.702e+001 -1.329e+003 +7.608e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +8.933e+001 +2.478e+002 +7.922e+001 -1.329e+003 +1.129e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +2.067e+002 

 Motif 6 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    42    EGTKTYSRAV
 2    36    EDTHTISMAW
 3    43    EGTHTIAMAL
 4    50    EFTHTISKAM
 5    37    EGYHTISMNQ
 6    42    EGTHTITMAY
 7    39    EGTCTISMAV
 8    44    EGTHTISMAS
 9    50    EGTHTISMAN
 10    51    EDTHTISTAK

Consensus:   EGTHTISMAV 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.2000 0.0000 0.1000 0.6999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.1000 
0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.7999 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 
0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7999 0.1000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.6999 0.0000 0.0000 0.0000 0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 
0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.1000 0.1000 0.1000 0.0000 0.1000 0.0000 0.1000 0.0000 0.2000 0.1000 0.1000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.329e+003 -1.329e+003 -1.329e+003 +4.083e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 +2.406e+002 -1.329e+003 +1.467e+002 +3.879e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.980e+002 -1.329e+003 -1.329e+003 +1.067e+002 
-1.329e+003 +9.702e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.200e+002 -1.329e+003 +1.084e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.132e+002 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.854e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.067e+002 
+6.636e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.858e+002 +8.100e+001 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.084e+002 -1.329e+003 +3.701e+002 -1.329e+003 -1.329e+003 -1.329e+003 +1.129e+002 -1.329e+003 +8.100e+001 -1.329e+003 -1.329e+003 -1.329e+003 
+3.833e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +8.933e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.084e+002 +1.079e+002 +8.933e+001 +8.933e+001 -1.329e+003 +1.193e+002 -1.329e+003 +8.584e+001 -1.329e+003 +1.995e+002 +1.317e+002 +1.067e+002 

[*] Allocation of Motifs in the set of sequences
------------------------------------------------
>artseq_1 
IEQWFCEFKLFDRVFNIYP [ KLIMATISMA ] NQNMEWWICGIP [ EGTKTYSRAV ] AKIQTRTAFLQRMGKQQGFDPVKNFGLA [ RNDCNEGHIM ] PITATIEQELMHPF [ EGHPLKIFPS ] TSYGPMHMKHPEIKEWYKFCPGSQ [ WYVTRQANPV ] REILGCYSHCGSKSLNNEDY [ ANCEHLMPTY ] NYVVAFPAVIGPVMRHDKWDQLDELIIQKLCDH

-------------------   20     Motif 2     29  ------------   42     Motif 6     51  ----------------------------   80     Motif 5     89  --------------   104     Motif 4     113  ------------------------   138     Motif 1     147  --------------------   168     Motif 3     177  ---------------------------------

>artseq_2 
 [ KYIMATISMA ] NTYRDIDSPMPTWHLTSKFKCMCKP [ EDTHTISMAW ] NPHSGWEHMPNVCRAWLNVKQGSEA [ RNDEQEGKIN ] GQVSTEEIKAEWGDRARFDL [ EGHILKMFPS ] GDADMKCLSNLII [ WYVPRQANPC ] VIISIKESEHCSCDYEGDLQCDLYCSTRPE [ VNCEHLMPTY ] ATVPQIGSNSNPKVCSMYPQHAVQYN

   1     Motif 2     10  -------------------------   36     Motif 6     45  -------------------------   71     Motif 5     80  --------------------   101     Motif 4     110  -------------   124     Motif 1     133  ------------------------------   164     Motif 3     173  --------------------------

>artseq_3 
IMMVVVNIIS [ KLIMCTISMA ] PWDCLGMIKIMPNYIPHCPLHP [ EGTHTIAMAL ] EIFRNGAKTILWDMCPRLNGYA [ RNDCQEGHIY ] YSYMMWKPVT [ MGHILKMFPS ] CLSPQCNPPEIPNWLAWRRAMNWLKR [ WYVTYQANPV ] ALKIVYKVGSEIYDSVGSRESII [ ANCEHLMPTY ] VCQEDIPYGRGQDRQMMNAQRCGNGDG

----------   11     Motif 2     20  ----------------------   43     Motif 6     52  ----------------------   75     Motif 5     84  ----------   95     Motif 4     104  --------------------------   131     Motif 1     140  -----------------------   164     Motif 3     173  ---------------------------

>artseq_4 
FPLCHHIWPRPVDFTFL [ KLIMATISMA ] ANRECPPNCEQQICGSCVEIFP [ EFTHTISKAM ] AANTWKMHFQSMA [ RNDCQEGHIN ] HFKSQTPRILECSRMPE [ KGHILKMFPS ] WVEREQDRCSANQRMNVNMDFVRTGCAD [ WYVTAQANLV ] RVYEFHKTGVT [ ANCEHLFPTG ] SITNAPVCILRQKNTRHVAGRD

-----------------   18     Motif 2     27  ----------------------   50     Motif 6     59  -------------   73     Motif 5     82  -----------------   100     Motif 4     109  ----------------------------   138     Motif 1     147  -----------   159     Motif 3     168  ----------------------

>artseq_5 
WMKCVLLG [ KLIMATISMA ] YADTHFTFALMEAWLCDP [ EGYHTISMNQ ] EQESMKEEGAMHEQCVFHHMLYSFA [ RNACQELHIY ] VWKESNEVQVHRHSCPSEAEENY [ EGHILKGFPA ] QKYGQW [ WYVTRQANPV ] YTKMSQMWWPPPHKVEQWKCVRISQLLAVIHCEDYPS [ ANCEMWVPTL ] FYQYINYQPYHGGDSRMSANAVKELAQPFPLLI

--------   9     Motif 2     18  ------------------   37     Motif 6     46  -------------------------   72     Motif 5     81  -----------------------   105     Motif 4     114  ------   121     Motif 1     130  -------------------------------------   168     Motif 3     177  ---------------------------------

>artseq_6 
DSVHHAYLNQPW [ KLEAATISMA ] RFWAKIWDGFMSHMPDGYY [ EGTHTITMAY ] CVGHERAFWTA [ RNDCQCGHIN ] VNKYTGWSLGILCYNRFLPPH [ EGDIGKMFPS ] WGRTNCWTQSSQPQIKTMWQLYMYWGTIECRTPFA [ WYVTRQANPV ] MGIQSMHEQSVPWE [ ANCEHLMPGY ] KYPYRWYSGMKFNTATHSFVMEPVNNEEYTIIIGCENLAMYR

------------   13     Motif 2     22  -------------------   42     Motif 6     51  -----------   63     Motif 5     72  ---------------------   94     Motif 4     103  -----------------------------------   139     Motif 1     148  --------------   163     Motif 3     172  ------------------------------------------

>artseq_7 
W [ CLIMATISMA ] VTWCIKKCSNNHYQYHGIWHFCFCLGP [ EGTCTISMAV ] PPALSWVVVKLRCVTFHDMMLLKHNMRA [ RNDCQEGFIC ] LVATKEYSMPSSTD [ EGHILKMSPE ] NTGTCMRGASKMRFGV [ WYVTKQANPV ] YWVKWHAYFINWCVRGAKVE [ ANCEHLMPTY ] CQPDYYWWVMTFVNWFIADQICGLCYVERDVGRCQVITLNMWWYWCTA

-   2     Motif 2     11  ---------------------------   39     Motif 6     48  ----------------------------   77     Motif 5     86  --------------   101     Motif 4     110  ----------------   127     Motif 1     136  --------------------   157     Motif 3     166  ------------------------------------------------

>artseq_8 
FIGMPDICK [ KMIMATISMA ] SWCSMNRLKTRQNVHESNWHYGNP [ EGTHTISMAS ] TYTYCRWAIVFFMRVVAKMA [ RNVCQEDHIE ] MAALTGVWTCEKDFWRKAHCPQQV [ EDHILKMFPS ] NFTNEQVHRDFMDTVYERQT [ WYVTRQANPV ] CYNDKMVDCED [ ANCEHLMPHY ] AELRKQIWNSVRYDDVSRGKYTLVSPVYY

---------   10     Motif 2     19  ------------------------   44     Motif 6     53  --------------------   74     Motif 5     83  ------------------------   108     Motif 4     117  --------------------   138     Motif 1     147  -----------   159     Motif 3     168  -----------------------------

>artseq_9 
QFIPACVQ [ KLIMATISMA ] IYETNPDSGSEDNATEPWLSNQFILRGIRYP [ EGTHTISMAN ] MLNAYIA [ RNDGQEGHIR ] TYFGGRCCFDIFMQDDQNCSHSDHCRKKK [ EGHILDMFPS ] VDRHTIYCICI [ WYQTRQANPV ] PSKRLTKPFDAPRICMYDAALP [ AACEHLMPTQ ] CTAKSWFSRFNVQNHDWITKSNIDWIMFWGLRLHNGVSPELFDYSNIGCITH

--------   9     Motif 2     18  -------------------------------   50     Motif 6     59  -------   67     Motif 5     76  -----------------------------   106     Motif 4     115  -----------   127     Motif 1     136  ----------------------   159     Motif 3     168  ----------------------------------------------------

>artseq_10 
CDHKPEYQ [ KLIMATISMA ] CKCRCRTQTAYAWWVYCSWEFSPTPPREYHIP [ EDTHTISTAK ] QTLPRFAWSQLGEKRTHA [ RNDCQEGEIP ] CDTWYAMV [ EGEILKMFPS ] EAYACSGVPENQKAIFVK [ WYVTRQANPV ] AHTYWPDHCSTEWWISFWFHM [ ANCEHLMPGY ] QPIGYCRNCLCLEKSKNYSFPNDWCSIIHGKDNWLYSRWK

--------   9     Motif 2     18  --------------------------------   51     Motif 6     60  ------------------   79     Motif 5     88  --------   97     Motif 4     106  ------------------   125     Motif 1     134  ---------------------   156     Motif 3     165  ----------------------------------------