artificial_res.txt

greedy em 混和模型训练算法

[*] Position Weight Matrix
--------------------------
0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 
0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.2000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6999 

[*] Position Specific Scoring Matrix
------------------------------------
+3.833e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +9.948e+001 -1.329e+003 -1.329e+003 
+6.636e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.063e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 +4.292e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 +4.083e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.370e+002 -1.329e+003 -1.329e+003 -1.329e+003 +8.933e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.249e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.317e+002 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.467e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.893e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +9.948e+001 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.114e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +2.071e+002 +1.200e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.617e+002 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.071e+002 -1.329e+003 -1.329e+003 -1.329e+003 +1.079e+002 -1.329e+003 -1.329e+003 -1.329e+003 +1.193e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.874e+002 

 Motif 4 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    104    EGHPLKIFPS
 2    101    EGHILKMFPS
 3    95    MGHILKMFPS
 4    100    KGHILKMFPS
 5    105    EGHILKGFPA
 6    94    EGDIGKMFPS
 7    101    EGHILKMSPE
 8    108    EDHILKMFPS
 9    106    EGHILDMFPS
 10    97    EGEILKMFPS

Consensus:   EGHILKMFPS 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.1000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.1000 0.1000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.1000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.329e+003 -1.329e+003 -1.329e+003 +3.761e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.084e+002 -1.329e+003 +8.933e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 +1.406e+002 -1.329e+003 -1.329e+003 +4.241e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 +1.406e+002 +7.608e+001 -1.329e+003 -1.329e+003 +4.200e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.854e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +7.922e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.071e+002 -1.329e+003 -1.329e+003 -1.329e+003 +4.249e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 +1.406e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.254e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.071e+002 -1.329e+003 +6.846e+001 -1.329e+003 -1.329e+003 +3.893e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.637e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +8.584e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.114e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+6.636e+001 -1.329e+003 -1.329e+003 +7.608e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.858e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 

 Motif 5 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    80    RNDCNEGHIM
 2    71    RNDEQEGKIN
 3    75    RNDCQEGHIY
 4    73    RNDCQEGHIN
 5    72    RNACQELHIY
 6    63    RNDCQCGHIN
 7    77    RNDCQEGFIC
 8    74    RNVCQEDHIE
 9    67    RNDGQEGHIR
 10    79    RNDCQEGEIP

Consensus:   RNDCQEGHIN 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1000 0.0000 0.7999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 
0.0000 0.7999 0.0000 0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.1000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.1000 0.0000 0.0000 0.7999 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.1000 0.1000 0.0000 0.6999 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.3000 0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.2000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.451e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.215e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+6.636e+001 -1.329e+003 +4.406e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +9.948e+001 -1.329e+003 -1.329e+003