artificial_res.txt

greedy em 混和模型训练算法

 Motif 1 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    138    WYVTRQANPV
 2    124    WYVPRQANPC
 3    131    WYVTYQANPV
 4    138    WYVTAQANLV
 5    121    WYVTRQANPV
 6    139    WYVTRQANPV
 7    127    WYVTKQANPV
 8    138    WYVTRQANPV
 9    127    WYQTRQANPV
 10    125    WYVTRQANPV

Consensus:   WYVTRQANPV 

[*] Position Weight Matrix
--------------------------
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 
0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6999 0.0000 0.0000 0.0000 0.0000 0.1000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.639e+002 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.389e+002 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.193e+002 -1.329e+003 -1.329e+003 -1.329e+003 +4.165e+002 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +7.922e+001 -1.329e+003 -1.329e+003 -1.329e+003 +3.980e+002 -1.329e+003 -1.329e+003 -1.329e+003 
+6.636e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.084e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +3.937e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.067e+002 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.515e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+3.985e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.215e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.079e+002 -1.329e+003 -1.329e+003 +3.962e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 +9.702e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.165e+002 -1.329e+003 -1.329e+003 

 Motif 2 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    20    KLIMATISMA
 2    1    KYIMATISMA
 3    11    KLIMCTISMA
 4    18    KLIMATISMA
 5    9    KLIMATISMA
 6    13    KLEAATISMA
 7    2    CLIMATISMA
 8    10    KMIMATISMA
 9    9    KLIMATISMA
 10    9    KLIMATISMA

Consensus:   KLIMATISMA 

[*] Position Weight Matrix
--------------------------
0.0000 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.7999 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1000 
0.0000 0.0000 0.0000 0.1000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.8999 0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 
0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 
0.9999 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 

[*] Position Specific Scoring Matrix
------------------------------------
-1.329e+003 +9.702e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.254e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.079e+002 +8.933e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +1.067e+002 
-1.329e+003 -1.329e+003 -1.329e+003 +7.608e+001 -1.329e+003 -1.329e+003 -1.329e+003 +3.854e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+6.636e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.063e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+3.833e+002 +9.702e+001 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.132e+002 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.006e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.180e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
-1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 +4.215e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 
+3.985e+002 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 -1.329e+003 

 Motif 3 results

[*] Motif occurrences 
----------------------
Seq   Start  substring 
 1    168    ANCEHLMPTY
 2    164    VNCEHLMPTY
 3    164    ANCEHLMPTY
 4    159    ANCEHLFPTG
 5    168    ANCEMWVPTL
 6    163    ANCEHLMPGY
 7    157    ANCEHLMPTY
 8    159    ANCEHLMPHY
 9    159    AACEHLMPTQ
 10    156    ANCEHLMPGY

Consensus:   ANCEHLMPTY