loadavg.m

来自「含有多种ICA算法的eeglab工具箱」· M 代码 · 共 169 行

% loadavg() - loading eeg average data file from Neuroscan into
%             matlab. 
%
% Usage:
%  >> [signal, variance, chan_names, ...
%               pnts, rate, xmin, xmax] = loadavg( filename );
%
% Inputs:
%      filename   -  input Neuroscan .avg file      
%      signal	  -  output signal	
%      variance   -  variance of the signal 
%      chan_names -  array that represent the name of the electrodes
%
% Example: 
%  % load data into the array named 'signal'
%  [signal]=loadavg( 'test.avg' );     
%  % plot the signal for the first electrode
%  plot( signal(1,:) );	  		
%
% See also: eeglab()

%123456789012345678901234567890123456789012345678901234567890123456789012

% Copyright (C) 2001 Arnaud Delorme, Salk Institute, [e-mail]
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software
% Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

% Average binary file format
% Average data is stored as 4-byte floats in vectored format for each
% channel. Each channel has a 5-byte header that is no longer used. Thus,
% after the main file header, there is an unused 5-byte header followed by
% erp.pnts of 4-byte floating point numbers for the first channel; then a
% 5-byte header for channel two followed by erp.pnts*sizeof(float) bytes,
% etc. Therefore, the total number of bytes after the main header is:
% erp.nchannels * (5 + erp.pnts*sizeof(float)). To scale a data point to
% microvolts, multiply by the channel-specific calibration factor (i.e., for
% electrode j: channel[j]->calib) and divide by the number of sweeps in the
% average (i.e., channel[j]->n).

% $Log: loadavg.m,v $
% Revision 1.2  2002/11/04 02:31:51  arno
% adding sweeps
%
% Revision 1.1  2002/04/05 17:39:45  jorn
% Initial revision
%

function [signal, variance, chan_names, pnts, rate, xmin, xmax]=loadavg( FILENAME)

if nargin<1 
	help loadavg 
	return; 
end;
%if isempty(find(FILENAME=='.')) FILENAME=[FILENAME '.eeg']; end;

BOOL='int16';
ULONG='int32'; 
FLOAT='float32';
fid=fopen(FILENAME,'r','ieee-le');
if fid<0
	fprintf(2,['Error LOADEEG: File ' FILENAME ' not found\n']);  
	return;
end;

S_nsweeps_offset 		= 362;
S_pnts_offset 			= 368;
S_nchans_offset 		= 370;
S_variance_offset 		= 375;
S_rate_offset 			= 376;
S_xmin_offset 			= 505;
S_xmax_offset 			= 509;
packed_sizeof_SETUP 		= 900;

% read general part of the erp header and set variables
% -----------------------------------------------------
%erp = fread(fid, 362, 'uchar');	% skip the firsts 368 bytes
%nsweeps = fread(fid, 1, 'ushort');	% number of sweeps
%erp = fread(fid, 4, 'uchar'); 	% skip 4 bytes 
%pnts= fread(fid, 1, 'ushort');	% number of point per waveform
%chan= fread(fid, 1, 'ushort');  % number of channels
%erp = fread(fid, 4, 'uchar'); 	% skip 4 bytes 
%rate= fread(fid, 1, 'ushort');  % sample rate (Hz)
%erp = fread(fid, 127, 'uchar');	% skip 125 bytes 
%xmin= fread(fid, 1, 'float32'); % in s
%xmax= fread(fid, 1, 'float32'); % in s
%erp = fread(fid, 387, 'uchar');	% skip 387 bytes 

% read # of channels, # of samples, variance flag, and real time bounds
% ---------------------------------------------------------------------
fseek(fid, S_nsweeps_offset, 'bof');  	nsweeps = fread(fid, 1, 'ushort');
fseek(fid, S_pnts_offset, 'bof');  		pnts = fread(fid, 1, 'ushort');
fseek(fid, S_nchans_offset, 'bof');	  	chan = fread(fid, 1, 'ushort');
fseek(fid, S_variance_offset, 'bof');  	variance_flag = fread(fid, 1, 'uchar');
fseek(fid, S_rate_offset, 'bof');  		rate = fread(fid, 1, 'ushort');
fseek(fid, S_xmin_offset, 'bof');  		xmin = fread(fid, 1, 'float32');
fseek(fid, S_xmax_offset, 'bof');  		xmax = fread(fid, 1, 'float32');
fseek(fid, packed_sizeof_SETUP, 'bof');

fprintf('number of channels         : %d\n', chan);
fprintf('number of points per trial : %d\n', pnts);
fprintf('sampling rate (Hz)         : %f\n', rate);
fprintf('xmin (s)                   : %f\n', xmin);
fprintf('xmax (s)                   : %f\n', xmax);
fprintf('number of trials (s)       : %d\n', nsweeps);

% read electrode configuration
% ----------------------------
fprintf('Electrode configuration\n');
for elec = 1:chan
   	channel_label_tmp = fread(fid, 10, 'uchar');
	chan_names(elec,:) = channel_label_tmp';
	for index = 2:9 if chan_names(elec,index) == 0 chan_names(elec,index)=' '; end; end;
	erp = fread(fid, 47-10, 'uchar');
	baseline(elec) = fread(fid, 1, 'ushort');
	erp = fread(fid, 10, 'uchar');
	sensitivity(elec) = fread(fid, 1, 'float32');
	erp = fread(fid, 8, 'uchar');
	calib(elec) = fread(fid, 1, 'float32');
	fprintf('%s: baseline: %d\tsensitivity: %f\tcalibration: %f\n', chan_names(elec,1:4), baseline(elec), sensitivity(elec), calib(elec));
	factor(elec) = calib(elec) * sensitivity(elec) / 204.8;
end;

xsize    = chan * pnts;
buf_size = chan * pnts ;			% size in shorts

count_selected = 1;
fprintf('Reserving array (can take some time)\n');
signal = zeros( chan, pnts*nsweeps);
fprintf('Array reserved, scanning file\n');

signal   = zeros(pnts, chan);
variance = zeros(pnts, chan);

for elec = 1:chan

	% skip sweeps header and read data	
	% --------------------------------
	fseek(fid, 5, 'cof');
	signal(:, elec) = fread(fid, pnts, 'float32') * calib(elec) / nsweeps;
end;

if variance_flag
	for elec = 1:chan
		variance(:, elec) = fread(fid, pnts, 'float32');
	end;
else
	variance = 'novariance';
end;	

signal = signal';
variance = variance';

fclose(fid);
return;